PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_D0F3E9568.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 914aa    MW: 102024 Da    PI: 5.9025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_D0F3E9568.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.82.4e-292106199
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kv tpsd++k++rlv+pk++ae++     +++ ++  l +ed+ g+ W+++++y+++s++yv+tkGW++Fvk+ +L++gD+v Fk+
  Traes_4DL_D0F3E9568.2   2 FDKVVTPSDTGKLNRLVIPKQHAEKYfpldASSNDNGLLLDFEDSAGKPWRFRYSYWNSSQSYVMTKGWSRFVKETRLEAGDIVSFKR 89 
                            89***************************9445557889************************************************6 PP

                            -.SS.SEE..EEEEE-S CS
                     B3  85 d.gr.sefelvvkvfrk 99 
                              g+  ++++++ ++r+
  Traes_4DL_D0F3E9568.2  90 GvGEaARGRFFIDWRRR 106
                            65888999999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.98E-23189No hitNo description
Gene3DG3DSA:2.40.330.102.1E-361102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.7482107IPR003340B3 DNA binding domain
SMARTSM010194.0E-212107IPR003340B3 DNA binding domain
PfamPF023626.8E-272106IPR003340B3 DNA binding domain
SuperFamilySSF1019364.19E-272104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF511011.7E-33151297IPR001229Jacalin-like lectin domain
Gene3DG3DSA:2.100.10.301.8E-35152298IPR001229Jacalin-like lectin domain
PROSITE profilePS5175229.299152299IPR001229Jacalin-like lectin domain
CDDcd096122.31E-33163297IPR033734Jacalin-like lectin domain, plant
SMARTSM009151.3E-4163299IPR001229Jacalin-like lectin domain
PfamPF014192.0E-19167298IPR001229Jacalin-like lectin domain
Gene3DG3DSA:2.100.10.305.0E-38311458IPR001229Jacalin-like lectin domain
SuperFamilySSF511011.2E-36312458IPR001229Jacalin-like lectin domain
PROSITE profilePS5175233.022313458IPR001229Jacalin-like lectin domain
SMARTSM009158.5E-10324458IPR001229Jacalin-like lectin domain
CDDcd096123.33E-26324457IPR033734Jacalin-like lectin domain, plant
PfamPF014192.5E-20328458IPR001229Jacalin-like lectin domain
SuperFamilySSF561121.29E-60503764IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.202.5E-9507552No hitNo description
SMARTSM002203.6E-34518759IPR000719Protein kinase domain
PROSITE profilePS5001130.139518762IPR000719Protein kinase domain
PROSITE patternPS001070524545IPR017441Protein kinase, ATP binding site
PfamPF000691.1E-36567757IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.101.3E-44584770No hitNo description
PROSITE patternPS001080623635IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5020215.018779909IPR000535Major sperm protein (MSP) domain
SuperFamilySSF493541.18E-16794909IPR008962PapD-like
Gene3DG3DSA:2.60.40.3601.0E-15794907IPR008962PapD-like
PfamPF006351.3E-10795886IPR000535Major sperm protein (MSP) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MFDKVVTPSD TGKLNRLVIP KQHAEKYFPL DASSNDNGLL LDFEDSAGKP WRFRYSYWNS  60
SQSYVMTKGW SRFVKETRLE AGDIVSFKRG VGEAARGRFF IDWRRRRGPD VVLPPPHHRG  120
FNLLSVGSDG FACPDVNLEG DSVEEILDKA YITKIGPWGG NRGNFNDIKV SPLRLNSITI  180
RSGEVIYSLA FSYSDNYGKQ HHAGPWGGCK DFSYGSFDTI QLGPSEFLTK VSGTIAFSAQ  240
YSSNVITSVM FITTARRYGP FGGGVGIPFQ SPVMSNGSIV GFFAHAEWVV ESIGLYVNSE  300
SKLWEPMKGQ DSVTKIGPWG GDSGRPNDVN VLPRRLLSVV VRNSTVISSL TFTYIDWDGQ  360
PQTAGPWGGL GESFDGKVDT IILGRSEFLT EVSGTLGWNS GYSDVVTSLY FVTNTGGYGP  420
YGKGGGTRFR SSHSNGSIVG FFVNAADVID AIGVYFSPER ETCKEKEEGG FGISRSMAYR  480
ERVEIESASN DLEHIVLDQS AEPTNLPLAL LKDITEDFND KRQIGRGGFG IVYKGDLQNR  540
SVAVKRILSC HTFNDEAFNQ SGEPWKYVFA EMRERLLCFE YIKNGSLDRY LTDELRGLEW  600
HTRYQIIRGI CDGLVYLHTE KGIVHRDMKP ENILLDDLMI PKITDFGISK LLDGATHAVT  660
SDPTGSRGYC APEFIARGEV STRSDIYSLG VIITELVTGC KDEPHIQNVL RRWRYRWNES  720
ANYPPFGYQQ VSKCIEIALK CLSDSPKKRP KISDIVSMLN TMESTKEHIT NVGNSPAGQI  780
SAYPWELLEF DLLELNFPFE INKQIPCSLQ LTNVTDDYVA FDIEMMGILR YCIEPEKRVV  840
PPRSKCNVMV TLQPHERVPH AMVCKDELFI LRCAAVSEGL TAEDIIEDML NKKSGKEEAD  900
KVTLKVVILP ITVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-41111613127DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666011e-113AK366601.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044K15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW5ELZ50.0W5ELZ5_WHEAT; Uncharacterized protein
STRINGMLOC_71538.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2261944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-47B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]